Showing posts with label electrophysiology. Show all posts
Showing posts with label electrophysiology. Show all posts

Thursday, 19 January 2012

Novelty, interest and replicability


So at last, your paper is written. It represents the culmination of many years’ work. You think is an important advance for the field. You write it up. You carefully format it for your favoured journal. You grapple with the journal’s portal, tracking down details of recommended reviewers and then sit back. You anticipate a delay of a few weeks before you get reviewer comments. But, no. What’s this? A decision letter within a week: “Unfortunately we receive many more papers than we can publish or indeed review and must make difficult decisions on the basis of novelty and general interest as well as technical correctness.” It’s the publishing equivalent of the grim reaper: a reject without review.

It happens increasingly often, especially if you send work to journals with high impact factors. I’ve been an editor and I know there are difficult decisions to make. It can be kinder to an author to reject immediately if you sense that the paper isn’t going to make it through the review process. One thing you learn as an author is that there’s no point protesting or moaning. You just try again with another journal. I’m confident our paper is important and will get published, and there’s no reason for me to single this journal out for complaint. But this experience has made me reflect more generally on factors affecting publication, and I do think there are things about the system that are problematic.

So, using this blog as my soapbox, there are two points I’d like to make: A little one and a big one. Let’s get the little one out of the way first. It’s simply this: if a journal commonly rejects papers without review, then it shouldn’t be fussy about the format in which a paper is submitted. It’s just silly for busy people to spend time getting the references correctly punctuated, or converting their figures to a specific format, if there’s a strong probability that their paper will be bounced. Let the formatting issues be addressed after the first round of review.
The second point concerns the criteria of “novelty and general interest”. My guess is that our paper was triaged on the novelty criterion because it involved replication. We reported a study that involved measuring electrical brain responses to sounds. We compared these responses in children with developmental language impairments and typically-developing children. The rationale is explained in a blogpost I wrote for the Wellcome Trust.
We’re not the first people to do this kind of research. There have been a few previous studies, but it’s a fair summary to say the literature is messy. I reviewed part of it a few years back and I was shocked at how bad things were. It was virtually impossible to draw any general conclusions from 26 studies. Now these studies are really hard to do. Just recruiting people is difficult and it can take months if not years to get an adequate sample. Then there is the data analysis which is not for the innumerate or faint-hearted. So a huge amount of time and money had gone into these studies, but we didn’t seem to be progressing very far. The reason was simple: you couldn’t generalise because nobody ever attempted to replicate previous research. The studies were focussed on the same big questions, but they differed in important ways. So if they got different results, you couldn’t tell why.
In response to this, part of my research strategy has been to take those studies that look the strongest and attempt to replicate them. So when we found strikingly similar results to a study by Shafer et al (2010) I was excited. The fact that two independent labs on different sides of the world had obtained virtually the same result gave me confidence in the findings. I was able to build on this result to do some novel analyses that helped establish direction of causal influences, and felt we at last we were getting somewhere. But my excitement was clearly not shared by the journal editor, who no doubt felt our findings were not sufficiently novel. I wasn’t particularly surprised by this decision, as this is the way things work. But is the focus on novelty good for science?
The problem is that unless novel findings are replicated, we don’t know which results are solid and reliable. We ought to know: we apply statistical methods with the sole goal of establishing this. But in practice, statistics are seldom used appropriately. People generate complex datasets and then explore different ways of analysing data to find statistically significant results. In electrophysiological studies, there are numerous alternative ways in which data can be analysed, by examining different peaks in a waveform, different methods of identifying peaks, different electrodes, different time windows, and so on. If you do this, it is all too easy for “false positives” to be mistaken as genuine effects (Simmons, Nelson, & Simonsohn, 2011). And the problem is compounded by the “file drawer problem” whereby people don’t publish null results. Such considerations led Ioannidis (2005) to conclude that most published research findings are false.
This is well-recognised in the field of genetics, where it became apparent that most early studies linking genetic variants to phenotypes were spurious (see Flint et al). The reaction, reflected in a recent editorial in Behavior Genetics has been to insist that authors replicate findings of associations between genes and behaviour. So if you want to say something novel, you have to demonstrate the effect in two independent samples.
This is all well and good, but requiring that authors replicate their results is unrealistic in a field where a study takes several years to complete, or involves a rare disorder. You can, however, create an expectation that researchers include a replication of prior work when designing a study, and/or use existing research to generate a priori predictions about expected effects.
It wouldn’t be good for science if journals only published boring replications of things we already knew. Once a finding is established as reliable, then there’s no point in repeating the study. But something that has been demonstrated at least twice in independent samples (replicable) is far more important to science than something that has never been shown before (novel), because the latter is likely to be spurious. I see this as a massive challenge for psychology and neuroscience.
In short, my view is that top journals should reverse their priorities and treat replicability as more important than novelty.
Unfortunately, most scientists don’t bother to attempt replications because they know the work will be hard to publish. We will only reverse that perception if journal editors begin to put emphasis on replicability.
A few individuals are speaking out on this topic. I recommend a blogpost by Brian Knutson who argued, “Replication should be celebrated rather than denigrated.” He suggested that we need a replicability index to complement the H-index. If scientists were rewarded for doing studies that others can replicate, we might see a very different rank ordering of research stars.
I leave the last word to Kent Anderson: “Perhaps we’re measuring the wrong things … Perhaps we should measure how many results have been replicated. Without that, we are pursuing a cacophony of claims, not cultivating a world of harmonious truths.”


Simmons, J., Nelson, L., & Simonsohn, U. (2011). False-Positive Psychology: Undisclosed Flexibility in Data Collection and Analysis Allows Presenting Anything as Significant Psychological Science, 22 (11), 1359-1366 DOI: 10.1177/0956797611417632